SE2750349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3682
  • Setaria italica
  • SE2750349
  • PIF/harbinger
  • To1
  • scaffold_3:1771553-1771903
  • TTA
  • AGGGAGCGTTTGGTTCCTCGAGCT

Secondary structure and sequence

TSD    TIR
5'



3'
TT    A  -            G    AAAG      C G             A  C   GG           GAC     A       A        -   A        A             A                          C     C   -A    ATATTTAC   AGC
  AGGG GC GTTTGGTTCCTC AGCT    TTTAGT T TGTCATATCGAAT TT GGA  TTAATTAGGAG   TAAAT TGAGTTA TTATAAAA CTA TTGCACAG TGGAGGCTAAACG CGAGATGAATCTATTAAGCCTAATTA TCCAT ATT  GCAA        TGT   
  |||| || |||||||||||| ||||    |||||| | ||||||||||||| || |||  |||||||||||   ||||| ||||||| |||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||  ||||        |||    
  TCCC CG CAAACCAAGGAG TTGA    AAATCG G ACAGTGTAGCTTA AA TCT  GATTAATCCTC   ATTTG ATTTGAT AATGTTTT GGT AATGTGTC ACCTCCGATTTGC GCTCTGCTTAGATAATTCGGATTAAT AGGTA TAA  TGTT        ACA   
AT    -  A            A    ATAA      T G             C  A   AT           ATA     C       A        A   -        G             C                          C     C   AC    --------   CTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End