SE2710350

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3683
  • Setaria italica
  • SE2710350
  • Tc1/Mariner
  • St2
  • scaffold_1:7358754-7359007
  • TA
  • TACTCCCTCCGTTTATTTTTATAAGGCGTGATATGACTTGACACGGTCTCCTAGATTACACTTTGACCGTTCATTTATCTTACATTATTTATAGTTATAAACTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                             G     A T  A  C   C  CT GA     --         TTC     T  T    -----     A    T        -   ATCA     -GA   CATT
TACTCCCTCCGTTTATTTTTATAAGGCGT ATATG C TG CA GGT TC  A  TTACA  CTTTGACCG   ATTTA CT ACAT     TATTT TAGT ATAAACTT ATA    TTGGA   GTA    
||||||||||||||||||||||||||||| ||||| | || || ||| ||  |  |||||  |||||||||   ||||| || ||||     ||||| |||| |||||||| |||    |||||   |||     
ATGAGGGAGGCAAATGAAAATATTCCGCG TGTGC G AT GT CTA AG  T  AATGT  GAAACTGGT   TAAAT GG TGTA     ATAAA ATTA TATTTGAA TAT    AATCT   CAT    
                             -     - T  A  T   -  TT GA     TA         TAT     C  T    AAAAA     A    -        C   -ACC     AAG   TAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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