Plant MITE

SE2710354

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3687
Setaria italica
SE2710354
Tc1/Mariner
St14
scaffold_2:40594711-40594967
TA
TACTCCCTCCGTCCCAAAAGAATGCAATTCTAATTTTGTCCTCAGTCAAAATATCTCAAGTTTGACCAAGTTTATA

Secondary structure and sequence

TSD TIR

5'

3'

               -          A      A         C       ATA   C                   -----      ATCAACTTTTATGACACAAAATAGATATGTTATGAAAATATAT
TACTCCCTCCGTCCC AAAAGAATGC ATTCTA TTTTGTCCT AGTCAAA   TCT AAGTTTGACCAAGTTTATA     AAGGGT                                           
||||||||||||||| |||||||||| |||||| ||||||||| |||||||   ||| |||||||||||||||||||     ||||||                                           T
ATGAGGGAGGCAGGG TTTTCTTACG TAAGAT AAAATAGGA TCAGTTT   AGG TTCAAACTGGTTTAAATAT     TACGTG                                           
               C          C      C         T       GAC   A                   ATTTT      TTCCTGAATACTATGGTTTATTCATAGTGATGTAAACGATACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710354

TACTCCCTCCGTCCCAAAAGAATGCAATTCTAATTTTGTCCTCAGTCAAAATATCTCAAGTTTGACCAAGTTTATAAAGGGTATCAACTTTTATGACACAAAATAGATATGTTATGAAAATATATTTCATAGCAAATGTAGTGATACTTATTTGGTATCATAAGTCCTTGTGCATTTTTATATAAATTTGGTCAAACTTAGGACAGTTTGACTTAGGATAAAACTAGAATCGCATTCTTTTCGGGACGGAGGGAGTA

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