Plant MITE

SE2710355

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3688
Setaria italica
SE2710355
Tc1/Mariner
St3
scaffold_5:26963677-26963828
TA
TACTCCCTCCGTTCCAAATTGTAGGTCGGTTTGGATTTTTCTAGATTCATAGCTTTTGCTAT

Secondary structure and sequence

TSD TIR

5'

3'

             C      G       GT    A T         T     C         ACAC         T
TACTCCCTCCGTT CAAATT TAGGTCG  TTGG T TTTCTAGAT CATAG TTTTGCTAT    CTAGATATA 
||||||||||||| |||||| |||||||  |||| | ||||||||| ||||| |||||||||    ||||||||| G
ATGAGGGAGGCAA GTTTAA ATCCAGC  AACC G AAAGATCTA GTATC AAAACGATA    GATCTGTAT 
             A      G       AA    - T         T     A         CATA         T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710355

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710355