SE2710357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3690
  • Setaria italica
  • SE2710357
  • Tc1/Mariner
  • St1
  • scaffold_7:427787-428047
  • TA
  • TACTACCTCCGTCCCAAAAAACAAGTCATTATAGGTGTGTCTTAACTCAAACTTTCTCAACTTTGACCAAATTTATAGAGAAAAGTATCAATGTTTATGCCATCAAATAGGTATATTAT

Secondary structure and sequence

TSD    TIR
5'



3'
    A                      A  A    TG        C         -  C  C         AT            G   CA         CC  C        ATA    AAAAATA    TC
TACT CCTCCGTCCCAAAAAACAAGTC TT TAGG  TGTCTTAA TCAAACTTT CT AA TTTGACCAA  TTATAGAGAAAA TAT  ATGTTTATG  AT AAATAGGT   TTAT       TATC  
|||| |||||||||||||||||||||| || ||||  |||||||| ||||||||| || || |||||||||  |||||||||||| |||  |||||||||  || ||||||||   ||||       ||||   
ATGA GGAGGCAGGGTTTTTTGTTCAG AA ATCC  ACAGGATT AGTTTGAAA GA TT AAACTGGTT  AATATCTTTTTT ATG  TATAAATAC  TA TTTATTCA   AGTG       ATAG  
    G                      C  A    TA        C         A  -  C         CT            G   TA         CA  C        --C    -ACCTAA    TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End