Plant MITE

SE2710365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3698
Setaria italica
SE2710365
Tc1/Mariner
St3
scaffold_9:42128511-42128662
TA
TACTCCCTCCTGTCCCAAATTGTAGGTCATTTTGGCTTTTCTAGGTGCATAGTTTTTGCTATGCACCTAGATATAGTGTATGTCTAGATGCATAATAATATCTATGAACTTAGAAAAGTCAAAACGACCTACAATTTGAAACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

          T  CC             A                 G     TTT   C      C         G
TACTCCCTCC GT  CAAATTGTAGGTC TTTTGGCTTTTCTAGGT CATAG   TTG TATGCA CTAGATATA 
|||||||||| ||  ||||||||||||| ||||||||||||||||| |||||   ||| |||||| ||||||||| T
ATGAGGGAGG CA  GTTTAACATCCAG AAAACTGAAAAGATTCA GTATC   AAT ATACGT GATCTGTAT 
          -  AA             C                 A     TAT   A      A         G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710365

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710365