Plant MITE

SE2710372

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3705
Setaria italica
SE2710372
Tc1/Mariner
St3
scaffold_1:5415563-5415675
TA
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGGCTT

Secondary structure and sequence

TSD TIR

5'

3'

        C                            AGTATA     ATG    ATAA
TACTCCCT CGTTCCAAATTGTAGGTCGTTTTGGCTT      TCTAG   CATA    
|||||||| ||||||||||||||||||||||||||||      |||||   ||||     
ATGAGGGA GCAAGGTTTAACATCCAGCAAAACCGAA      AGATC   GTAT    
        A                            -----A     CAA    CTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710372

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710372