Plant MITE

SE2720378

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3711
Setaria italica
SE2720378
Mutator
M17
scaffold_8:2228783-2229063
TAATCTATA
TAGG

Secondary structure and sequence

TSD TIR

5'

3'

TAATCTA    ATTTTTG   A                 A   C       TTAAAA     A                              G                A     A  C      TTT   T   TGCCCC
       TAGG       GTG TCTTGCCCCTACTTTGA GTG AATTGTG      CCCTC TTTTTTTAACTTTGTGATTTTGCCCTCAAC ATTCACAAGTCAATGC ATTTT CC TTGGTC   GCG ATT      
       ||||       ||| ||||||||||||||||| ||| |||||||      ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||   ||| |||       
       ATCC       CAC AGAATGGGGATGAAACT CAC TTAACAC      GGGAG AAAAGAGTTGAAACACTAAAACGGGAGTTG TAAGTGTTCAGTTACG TAAAA GG GATCAG   TGC TAG      
ATATCTA    CCGTAAA   A                 A   C       TAAAAC     C                              A                C     C  A      --T   -   TTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2720378

TAATCTATAGGATTTTTGGTGATCTTGCCCCTACTTTGAAGTGCAATTGTGTTAAAACCCTCATTTTTTTAACTTTGTGATTTTGCCCTCAACGATTCACAAGTCAATGCAATTTTACCCTTGGTCTTTGCGTATTTGCCCCTATTTTGATCGTTGACTAGAGGCAAAATCGCATTGACTTGTGAATAGTTGAGGGCAAAATCACAAAGTTGAGAAAACGAGGGCAAAATCACAATTCCACATCAAAGTAGGGGTAAGAACACAAATGCCCCTAATCTATA

Copy Cancel