SE2750381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3714
  • Setaria italica
  • SE2750381
  • PIF/harbinger
  • To12
  • scaffold_3:49405375-49405653
  • TTT
  • GGCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT      -------       -   ----    -----A    GATGTGCCAAATTACTGTGCTGGTACTAGCACACTGTAGCGTTTCGTTTGTATTTGTGAATTATTGTCCAAACATTGACTAATTAGGCTCAAAAGATTCGTCT
   GGCCTT       GTTTAGT TGG    TCAA      TTGG                                                                                                       
   ||||||       ||||||| |||    ||||      ||||                                                                                                       C
   TCGGGA       AAGTGGG GTT    GTTG      TGAT                                                                                                       
 TT      ACAAATG       G   GAGG    AAACCG    ACGTTTTTCTTCTAAGGGGTAGTGTAGTTTGAACGCCATGTACGTACCTCATGATTTACATCTACTTTAATTTTTAATTAACGTGTCAAAACAACATGAAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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