SE2750385

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3718
  • Setaria italica
  • SE2750385
  • PIF/harbinger
  • To49
  • scaffold_1:11546909-11547212
  • TTA
  • AGATAGTGTTTGGTTCACCGAATGTAACACAAACACGTTACGGAGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 CC  -AT     A     ------------AC         T  T     -  A  GTTACAGGCATTTGTTTTGGCTTGGTCCGTAATCTATTACGCTGCAATCGGATACCAGTCTATTCAAATCGGATCCCGCTCGTCC
  AGATAGTGTTTGGTTCA  GA   GTAAC CAAAC              GTTACGGAG GA AACAA GT GC                                                                                     
  |||||||||||||||||  ||   ||||| |||||              ||||||||| || ||||| || ||                                                                                      
  TCTATCACAAACCAAGT  CT   CATTG GTTTG              TAGTGCCTC CT AGTCG GA CC                                                                                     
AT                 TC  CAC     C     CATTTACATTAACT         -  T     T  -  TTATACTTTAATGCAAGAGACAAACCAAGTTAGTTCCATTGCCATAGTATTTCATAATACTCCCTTCGCTACGCTAATGTTGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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