SE2710386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3719
  • Setaria italica
  • SE2710386
  • Tc1/Mariner
  • St3
  • scaffold_5:38086042-38086192
  • TA
  • TACTCCCTCCGTTTCAAATTGTAGGTCGTTTTGGCTTTTCTAGATACATGATTTTTGCTATGTACCTAGATATAGGTTATGTCTAGATACATAGCAGAATCTATGTATATAGAAAAGCCAAAACGACCTACATTTTGAAATGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                  T                       G       AT            C         G
TACTCCCTCCGTTTCAAA TGTAGGTCGTTTTGGCTTTTCTA ATACATG  TTTTGCTATGTA CTAGATATA 
|||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| G
ATGAGGGAGGTAAAGTTT ACATCCAGCAAAACCGAAAAGAT TATGTAT  AAGACGATACAT GATCTGTAT 
                  T                       A       CT            A         T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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