Plant MITE

SE2740390

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3723
Setaria italica
SE2740390
CACTA
Ca1
scaffold_8:25419983-25420683
GTA
CACTAAGTAGA

Secondary structure and sequence

TSD TIR

5'

3'

GTA     A     --AATTT   TTTCGATGCGTCCCCTTTTGTCCCGGTTTAAAGTTGGCTCGGGACAAAAGGTTCACCAACCGGGACTAAAGCTCGGTCAGTGGTGGGGGGCTCACCAACCGGGACCTTTTATCCCGGTTGCAAAGGCTAGTGTGAAAAAAAGATCCTGAGAGGCATTTTATCCCGGTTTGAAACACCAACCGGGATAAAAGACCCCCCTTTTATCAGGGTCGAAAGCCTTTTATCCCGGTTTGTAATACCAACCGGGATAAAAGGGGGTCATTTATCCCGGTCGGTGTTTCCAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGCA
   CACTA GTAGA       GAC                                                                                                                                                                                                                                                                                                                                        
   ||||| |||||       |||                                                                                                                                                                                                                                                                                                                                         
   GTGAT CATCT       GGA                                                                                                                                                                                                                                                                                                                                        
ATG     -     CTTAACC   AATCAGGGCCAACCATTCCACGTTTAGAGGGCTTTTAGGTAGGTCCTATTTGGTTGGCCCTGTTTTCCCCCCCAGAAAATAGGGCCCAGTGAGTTGGCCCTGTTTTCTGGGGGAAAATAGGGCCAACCATGGCCCTATTTTGCACAGTGGTACGGCCGCGTCGAGGGTCCTCCGGGGGGTGTTCGCGTGCAGCGTACAGTGTTCAGTGCGCTAAAAAGTGCGCTTTATACGCGCACGCGCGACGCACCCTAAGCTTGGGTGTTGGAGGTCGGAGCGCGCATCGAAGGAACGGTAGGGTGGATGTGTGGTGTAGACTTATATATCCCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2740390

GTACACTAAGTAGAAATTTGACTTTCGATGCGTCCCCTTTTGTCCCGGTTTAAAGTTGGCTCGGGACAAAAGGTTCACCAACCGGGACTAAAGCTCGGTCAGTGGTGGGGGGCTCACCAACCGGGACCTTTTATCCCGGTTGCAAAGGCTAGTGTGAAAAAAAGATCCTGAGAGGCATTTTATCCCGGTTTGAAACACCAACCGGGATAAAAGACCCCCCTTTTATCAGGGTCGAAAGCCTTTTATCCCGGTTTGTAATACCAACCGGGATAAAAGGGGGTCATTTATCCCGGTCGGTGTTTCCAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGCATCCCCTATATATTCAGATGTGGTGTGTAGGTGGGATGGCAAGGAAGCTACGCGCGAGGCTGGAGGTTGTGGGTTCGAATCCCACGCAGCGCGCACGCGCATATTTCGCGTGAAAAATCGCGTGACTTGTGACATGCGACGTGCGCTTGTGGGGGGCCTCCTGGGAGCTGCGCCGGCATGGTGACACGTTTTATCCCGGTACCAACCGGGATAAAAGGGGGTCTTTTGTCCCGGTTGAGTGACCCGGGATAAAAGACCCCCCCTTTTGTCCCGGTTGGTTTATCCTGGATGGATTTTCGGGAGATTTGCACCTTACCAACCGGGACTAAAGGCCAATTCTCTACTAGTGGTA

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