SE2720393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3726
  • Setaria italica
  • SE2720393
  • Mutator
  • M4
  • scaffold_6:1237521-1237882
  • TTGGGGTGA
  • GAGCTCTTTTACGGTACACAATACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTGGGGT          A               -----------CCACTTA     -      -----        A ATATAACTATTCATTATTATAGATAATTTAGTAATTATTACATTGTAAAAAGTGATATTTCAAATGTAATGGTCTTTTAAACTTTATGCTTAGTGTCCAAAATAAAATTAT
        GAGCTCTTTT CGGTACACAATACTA                  GTGGT ATATAG     TATATATA G                                                                                                               
        |||||||||| |||||||||||||||                  ||||| ||||||     |||||||| |                                                                                                               A
        CTCGAGAAAA GCTATGTGTTATGAT                  TTTCC GATCAT     TGTTGGTT G                                                                                                               
TGGGGGTT          A               CCGATATCATCACAAGTT     T      ATTTT        - CCAGTTCTAATTAACATATGATGATTTTGGAAGCAGACACCATGCCTATCATATGTATCCATCATATACATCATATTCCCATAGTACCATTTTCTTGGGTTTACTGTAGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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