Plant MITE

SE2710395

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3728
Setaria italica
SE2710395
Tc1/Mariner
St27
scaffold_2:42230665-42230898
TA
TACTCCCTCCGTCCC

Secondary structure and sequence

TSD TIR

5'

3'

               ATA      GCAATCCTAACTTTTGAAAAAAATTCCTATAAAAGAGTGCAATCCTAGAACATTGATCTAACTACCTGCCTAATTAAGTAGTCAGATCTGATT
TACTCCCTCCGTCCC   AAAAGT                                                                                             
|||||||||||||||   ||||||                                                                                              
ATGAGGGAGGCAGGG   TTCTCA                                                                                             
               AAC      CGTTAAAATCAAAAAGATCCTGTTTAATCACCACCCCACTTTTCTGAGATTATGGGAATAAACAACCAGTGTACGTCATTCAAAACAGTACGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710395

TACTCCCTCCGTCCCATAAAAAGTGCAATCCTAACTTTTGAAAAAAATTCCTATAAAAGAGTGCAATCCTAGAACATTGATCTAACTACCTGCCTAATTAAGTAGTCAGATCTGATTTGCATGACAAAACTTACTGCATGTGACCAACAAATAAGGGTATTAGAGTCTTTTCACCCCACCACTAATTTGTCCTAGAAAAACTAAAATTGCACTCTTCAAGGGACGGAGGGAGTA

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