SE2710397

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3730
  • Setaria italica
  • SE2710397
  • Tc1/Mariner
  • St11
  • scaffold_8:21206295-21206439
  • TA
  • TACTCCCTCCCTTCCAAATTGTGAGTCGTTTTGGTTTTTTAGTGCATAGATGTTTGTATGTATTAATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
          C  C         A  C             --A  G                    AA   TGT
TACTCCCTCC TT CAAATTGTG GT GTTTTGGTTTTTT   GT CATAGATGTTTGTATGTATT  TAG   
|||||||||| || ||||||||| || |||||||||||||   || ||||||||||||||||||||  |||   A
ATGAGGGAGG AA GTTTAACAT CA TAAAATCGAAAAA   CA GTATCTACAAACATACGTAG  ATC   
          C  A         C  A             ATC  A                    --   TGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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