Plant MITE

SE2720404

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3737
Setaria italica
SE2720404
Mutator
M4
scaffold_1:26217919-26218284
TTTTTCATT
GAGCTCTTTTATAGTACACAATACTACTACT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTCATT            A  A         --------      TAGTG      ----     T  -  AAT    -C   -  --  TATTATGGATAATTTAGTAATTATTACATTGTAAAAGGTGACATTTCAAAATGGAATGTTCTTTTAAACTTTATGCTAATGTCAAAAATAAAATTATAGT
         GAGCTCTTTTAT GT CACAATACT        ACTACT     GATATA    GCATA AT AA   CTAA  TAT TC  AT                                                                                                    
         |||||||||||| || |||||||||        ||||||     ||||||    ||||| || ||   ||||  ||| ||  ||                                                                                                    G
         CTCGAGAAAATG CA GTGTTATGA        TGATGA     TTTTTA    TGATA TT TT   ATAG  TGC AG  CT                                                                                                    
TTACTTTTT            C  C         TCCGATAT      CAATT      CTGA     -  T  ---    GC   C  TT  AATTAACATATGATGACTTTGTAAGTGAACACCATACCAATCATATGTATTCATAATATACATCATATTCCCATAGTACCATTTTCTTGTATCTACTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2720404

TTTTTCATTGAGCTCTTTTATAGTACACAATACTACTACTTAGTGGATATAGCATATATAAAATCTAACTATTCATTATTATGGATAATTTAGTAATTATTACATTGTAAAAGGTGACATTTCAAAATGGAATGTTCTTTTAAACTTTATGCTAATGTCAAAAATAAAATTATAGTGATATCATCTATGTTCTTTTACCATGATACCCTTATACTACATATAATACTTATGTATACTAACCATACCACAAGTGAATGTTTCAGTAGTATACAATTAATCTTGACCGTCGGATATTTTTATAGTAGTCATTTTTTTAACAGTAGTTATAGCCTAGTATTGTGCACCGTAAAAGAGCTCTTTTTCATT

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