SE2750405

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3738
  • Setaria italica
  • SE2750405
  • PIF/harbinger
  • To1
  • scaffold_9:27956088-27956439
  • CTA
  • GGGGGTGTTTGGGAACACCGTGCTAAACTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3'
CTA             A  ACC                CCTA                   A           T         -   CA                    A                   G              C             G   T A   C     GCTA
   GGGGGTGTTTGGG AC   GTGCTAAACTTTAGCA    TCACATCGGATGTTTGGAT CTAATTAGGAG ATTAAATAT AGT  AATTACAAAACTAATTGCAC GATGGAGTCTAATTCGCGA ATGAATCTATTAAG CTAATTAGTCCAT ATT G CAA GTGGT    
   ||||||||||||| ||   ||||||||||||||||    ||||||||||||||||||| ||||||||||| ||||||||| |||  |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| ||| | ||| |||||    C
   CCCCCACAAACCT TG   CACGATTTGAAATCGT    AGTGTAGCCTATAAGCCTA GATTAATCTTC TGATTTGTA TCG  TTAATGTTTTGATTAACGTG CTACCTCAGATTAAGCGCT TGCTTAGATAATTC GATTAATTAGGTA TAA C GTT TACCA    
ATC             A  CTC                -CCC                   C           T         C   -A                    C                   A              C             G   T -   -     ATGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End