Plant MITE

SE2710407

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3740
Setaria italica
SE2710407
Tc1/Mariner
St3
scaffold_3:7853094-7853244
TA
TACTCCCTCCGTCCCAAATTACTATTCATCTTGGCTTTTCTAGATTCATCGTTTTTGCTATGCACCTAGATATATGCTATGTCTAGATACGTAGCAAAAGTCATGTACCTAGAAAAGCCAAAACGAATAGTAATTTGGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                           ATC             ATT   C -           CAC         T
TACTCCCTCCGTCCCAAATTACTATTC   TTGGCTTTTCTAG   CAT G TTTTTGCTATG   CTAGATATA 
|||||||||||||||||||||||||||   |||||||||||||   ||| | |||||||||||   ||||||||| G
ATGAGGGAGGCAGGGTTTAATGATAAG   AACCGAAAAGATC   GTA C GAAAACGATGC   GATCTGTAT 
                           CAA             CAT   - T           ATA         C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710407

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710407