SE2710408

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3741
  • Setaria italica
  • SE2710408
  • Tc1/Mariner
  • St3
  • scaffold_1:42032048-42032198
  • TA
  • TACTCCCTCCGTTCCAAATTGTAGGTCATTTTGACTTTTCTAGGTTCATACATATTATTATGCACCTAGACATACACTATATCTAGATGCATAATAATATCTACGAACCTAAAAAAGCTAAAACGACCTACAATTTGGAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                           A     A     C       A  C             C     C   C
TACTCCCTCCGTTCCAAATTGTAGGTC TTTTG CTTTT TAGGTTC TA ATATTATTATGCA CTAGA ATA 
||||||||||||||||||||||||||| ||||| ||||| ||||||| || ||||||||||||| ||||| ||| A
ATGAGGGAGGCAAGGTTTAACATCCAG AAAAT GAAAA ATCCAAG AT TATAATAATACGT GATCT TAT 
                           C     C     A       C  C             A     A   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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