Plant MITE

SE2710409

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3742
Setaria italica
SE2710409
Tc1/Mariner
St3
scaffold_9:54657861-54658012
TA
TACTCCATCCGTTCCATATTGTAGGTCGTTTTAGTTTTTTTAGGTTCATAGATATTATTATGCATCTAGATATAGTGTATGTCTAGGTACATAATAATATCTATGAACCTAAAAAAGTCCAAAATGACCTACAATTTGGAACGGAGGAAGTA

Secondary structure and sequence

TSD TIR

5'

3'

    -  A         T               A -                            C           G
TACT CC TCCGTTCCA ATTGTAGGTCGTTTT G TTTTTTTAGGTTCATAGATATTATTATG ATCTAGATATA 
|||| || ||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| T
ATGA GG AGGCAAGGT TAACATCCAGTAAAA C GAAAAAATCCAAGTATCTATAATAATAC TGGATCTGTAT 
    A  -         T               C T                            A           G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710409

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710409