Plant MITE

SE2710422

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3755
Setaria italica
SE2710422
Tc1/Mariner
St3
scaffold_9:8122656-8122806
TA
TACTCCCTCCGTTCCAAATTGTAGGTCGTTTTGACTTTTCTAGGTTCATAGATATTATTATGCACCTAGACATACACTATATCTAGATGCATAATAATATCTATGAACCTAAAAAAGCTAAAACGACTTGCAATGTAGGACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

              CAA                A     C                        C     C   C
TACTCCCTCCGTTC   ATTGTAGGTCGTTTTG CTTTT TAGGTTCATAGATATTATTATGCA CTAGA ATA 
||||||||||||||   |||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||| A
ATGAGGGAGGCAGG   TAACGTTCAGCAAAAT GAAAA ATCCAAGTATCTATAATAATACGT GATCT TAT 
              ATG                C     A                        A     A   C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2710422

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2710422