Plant MITE

SE2740424

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3757
Setaria italica
SE2740424
CACTA
Ca1
scaffold_9:14539097-14539800
GGT
TCACTAGTAGAGAA

Secondary structure and sequence

TSD TIR

5'

3'

GG     A        ACGAC       CC -  C          ---------   T   AAGTTGGCCCGGGATAAAAGGTTCACCAACCGGGACTAAAACTCAGTCACTGGTGGGAGGCTCACCAACCGGAACCTTTTATCCCGGTTGCAAAGGCTAATGGGAAAAAAAGACTCTGAGAGGCCTTTTATCCCGGTTTGAAACACCAACCGGGATAAAAGACCCCCCCCTTTTATCCCGGTTGGTAACACCAACCGAGATAAAAGGGTCAAAAGCCTTTTATCCCGGTTGGAGTTTCCAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGTATCCCCTACATAGTCA
  TCACT GTAGAGAA     TTTCCAT  G CC CCTTTTGTCC         CGG TTA                                                                                                                                                                                                                                                                                                            
  ||||| ||||||||     |||||||  | || ||||||||||         ||| |||                                                                                                                                                                                                                                                                                                             
  GGTGA CATCTCTT     ACTCGAA  A TA GGGCCAACCA         AAT AGG                                                                                                                                                                                                                                                                                                            
TG     C        ----C       -- T  -          TCCCACGAA   -   GCTTTTACGTAGGCCCTATTTGGTTGGCTCTGTTTTCCCCCCCAGAAAATAGGGCCCAGTGAGTTGGCCCTGTTTTCTGGGGGAAAATAGGGCCAACCTTTGTGGTTGGCCCTATTTTCCTAGCTCTCGCGGCTGCGACGTTTTTTTTTTTTAAGGGCTCGAGGGTCCTCCGGGGGGGTGTGCGCGTGCAGTGTTCAGTGTTCAGTGCGCTTTATACGCGCACGCGCCAAGCACCCTAAGCTTGGGTGTTGGAGGTCGGAGCGCGCATCGAAGGAACGGTAGGGTGGATGTGTGGTGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2740424

GGTCACTAGTAGAGAAACGACTTTCCATCCGCCCCCTTTTGTCCCGGTTTAAAGTTGGCCCGGGATAAAAGGTTCACCAACCGGGACTAAAACTCAGTCACTGGTGGGAGGCTCACCAACCGGAACCTTTTATCCCGGTTGCAAAGGCTAATGGGAAAAAAAGACTCTGAGAGGCCTTTTATCCCGGTTTGAAACACCAACCGGGATAAAAGACCCCCCCCTTTTATCCCGGTTGGTAACACCAACCGAGATAAAAGGGTCAAAAGCCTTTTATCCCGGTTGGAGTTTCCAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGTATCCCCTACATAGTCAGATGTGGTGTGTAGGTGGGATGGCAAGGAAGCTACGCGCGAGGCTGGAGGTTGTGGGTTCGAATCCCACGAACCGCGCACGCGCATATTTCGCGTGACTTGTGACTTGTGACGTGCGCGTGTGGGGGGGCCTCCTGGGAGCTCGGGAATTTTTTTTTTTTGCAGCGTCGGCGCTCTCGATCCTTTTATCCCGGTTGGTGTTTCCAACCGGGATAAAAGGGGGTCTTTTGTCCCGGTTGAGTGACCCGGGATAAAAGACCCCCCCTTTTGTCTCGGTTGGTTTATCCCGGATGCATTTTCGGGATAAAAGCACCCTACCAACCGGGATTAAAGCTCACTTCTCTACCAGTGGGT

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