SE2710425

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3758
  • Setaria italica
  • SE2710425
  • Tc1/Mariner
  • St35
  • scaffold_8:28840228-28840557
  • TA
  • TACTCCCTCCGTCCCACAAAGACTGTTCGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  AAAA   T    AAGA  ---   GCAATGCTAAAAGTCCAAAGTACCCATAATAACTCTTCTTAATTGGATGGATTACCAAGTAGAATTAATTATGCATGTACGCTTGCAGTAATTGTCGGACCTATTAGCCTT
TACTCCCTCCGTCCCACAAAGACTGTTCGTTTAG    TTT AGAC    TA   GTA                                                                                                               
||||||||||||||||||||||||||||||||||    ||| ||||    ||   |||                                                                                                                
ATGAGGGAGGTAGGGTGTTTTTGATAAGTAAATC    AAG TTTG    AC   GTG                                                                                                               
                                  --GG   T    ---A  AGG   TTTCTCACAGGTCTATTAGGTTGTTTCTGGGAGTATTATGGAAGACTGGGTTAATTGCTTAGCTAGTAAATGAGAGTGGTAGCTACGAGCTCGGTTTGAGCGATTTATTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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