SE2730426

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3759
  • Setaria italica
  • SE2730426
  • hAT
  • Hat11
  • scaffold_6:5049985-5050188
  • TGTATACG
  • GTATACGCAGGGGCGGATCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T                 T    -----     --    -   CCGGGCTGCAGCCCGGGGCGAGCCCATAAAACTGCATGTATCTCCATATTTTATGCAGTATAA
 GTATACGCAGGGGCGGA CCAG     GCCCC  GGGC TGC                                                               
 ||||||||||||||||| ||||     |||||  |||| |||                                                                
 CATATGTGTCCCCGCCT GGTC     GTCGG  TGGG CCG                                                               
G                 C    TTGAT     CC    C   ACCTGGTTCCGTTTAACTAAAATGTTACTTTATTACCCGATTAAACTACGATATACCCGGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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