SE2750436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3769
  • Setaria italica
  • SE2750436
  • PIF/harbinger
  • To1
  • scaffold_7:31628005-31628354
  • TTA
  • AGGAGGTGTTTGGATCCATGGACTAATTTTTAGTTCGGGTCACATCGGATGTTTGGATACCAATTAGGAGGACTAAACATGAACTAATTATAAAACTAATTGCATAAACGAGGGCTAATTCGCGAGATGAATCTATTAAGCCTAATTAATCCATAATTAGCACATG

Secondary structure and sequence

TSD    TIR
5'



3'
TT  GA           -  A        T         GG                 G    C         GAC    C   AA   ATT                   C                           T           A     A      A    AAACTGT
  AG  GGTGTTTGGAT CC TGGACTAA TTTTAGTTC  GTCACATCGGATGTTTG ATAC AATTAGGAG   TAAA ATG  CTA   ATAAAACTAATTGCATAAA GAGGGCTAATTCGCGAGATGAATCTAT AAGCCTAATTA TCCAT ATTAGC CATG       
  ||  ||||||||||| || |||||||| |||||||||  ||||||||||||||||| |||| |||||||||   |||| |||  |||   ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||        
  TC  CCACAAACCTA GG GCCTGATT GAAATCAGG  CAGTGTAGCCTACAAAC TGTG TTAATCCTC   ATTT TAT  GAT   TATTTTGATTAACGTATTT CTCCCGATTAAGCGCTCTGCTTAGATA TTCGGATTAAT AGGTA TAATCG GTAC       
AT  GC           T  A        T         GA                 G    A         ATA    A   CA   -AT                   A                           C           C     C      G    ACTACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End