SE2720438

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3771
  • Setaria italica
  • SE2720438
  • Mutator
  • M9
  • scaffold_9:348663-349381
  • AAATTGGAA
  • GGCAAAATAGGCACTTTGGTCCCTGAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATTGGAA             C                -------     TTGGCCAATTTAGTCCCTCAACTTTTATTTTTGGGTCAAACTCGTCCTTGTGTTGATGTGGTGCTCTATGTTAGCATAAAATTAATGCAAAAAGTCCATTTTCCCCTTGGCTCATCTAGGTCAAACATGTATATGCTCATACTCCCTTAATACATACACATAATAATATATTTTTAAACTGACACAAAATATGGTTTCTAAAAAGTGTATCTACCCGTACTCTTTAAAGTAATTCATGCATGTGCTCATACGAATTTGATAGGCAAAATATATGTACTCAAACAAGTATTTACTCATATTCTTTTGGTATAT
         GGCAAAATAGGCA TTTGGTCCCTGAACTT       TCAGA                                                                                                                                                                                                                                                                                                                        
         ||||||||||||| ||||||||||||||||       |||||                                                                                                                                                                                                                                                                                                                         
         CCGTTTTATCCGT GAACCAGGGACTTGAA       TCCTA                                                                                                                                                                                                                                                                                                                        
AAGGTTAAA             A                ATGTGTC     GTTGAAGTAGGGAGTTGAAAGTCTAACCGGTTAAATCAGGGAGTTGAAAGCAAAGACCCAGTTTGAGTAGGAACACGACTATACACCGAGGTTTAACCATACTTTGATTATTGTTTCCAGGTAAACTTGGAATCAATAAAAGAGAAAAGTTAAAAGTGGAAATCCTAATATTATTGCATACTAGGTTTTATTTATACTCCTACGTATACAAACGGCTCCCTCATGCTTATGTATGTACCTCGTACATATTACATGGTGCTCATACACTCGTGTACAACTAAAATCTTGTACGGATGTGTGTAACTCAACATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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