Plant MITE

SE2750440

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3773
Setaria italica
SE2750440
PIF/harbinger
To53
scaffold_9:50569954-50570250
TTA
AGGCCTCGTTCGTTTTCACCGGATTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT               T    -       --C     --   AGGTCCATTCCGGATGGTTTGAAGTGACCCGGTTTGAAACCAGACTTGCATTGAAAGTGTTGTTCGTTTTAGTCTGGCCTGGAACGAAAACCAGCCTGGATTGGAATC
  AGGCCTCGTTCGTTT CACC GGATTGG   CCGGA  ATG                                                                                                            
  ||||||||||||||| |||| |||||||   |||||  |||                                                                                                            C
  TCCGGAGCAAGCAAA GTGG CCTAACC   GGTCG  CCT                                                                                                            
AT               -    T       TAA     AT   AATGAAGGTCCAGGCCAAACTCACTAAGGTGGGAACAGTGAGTTAGGCCAGTCCTAAGTAAGGTCCCCACTCCTCCATACCAAAGTTAGGCCCGGTAGATTACATCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750440

TTAGGCCTCGTTCGTTTTCACCGGATTGGCCCGGAATGAGGTCCATTCCGGATGGTTTGAAGTGACCCGGTTTGAAACCAGACTTGCATTGAAAGTGTTGTTCGTTTTAGTCTGGCCTGGAACGAAAACCAGCCTGGATTGGAATCCTTCTACATTAGATGGCCCGGATTGAAACCATACCTCCTCACCCCTGGAATGAATCCTGACCGGATTGAGTGACAAGGGTGGAATCACTCAAACCGGACCTGGAAGTAATCCTAGCTGGAATCCAATCCTGGTGAAACGAACGAGGCCTTA

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