Plant MITE

SE2720441

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3774
Setaria italica
SE2720441
Mutator
M19
scaffold_9:32776878-32777246
TAGATTTAA
TAGATTTAAGAGTTTTGCTATTTATCTGTCGACAGTTTTTTGGCAGAAAATCTGTCGAATTTTTTAATGTTGTAAATGTCATCATTTGATGTTGCA

Secondary structure and sequence

TSD TIR

5'

3'

         -A    TT   T                T       CA -         C       TTA        A    -CA     T         ------      ATTCTTCGATGTTTCAAAATATTTCATGATTTTAGAGGAGGAAATGTGATTTTAGAGGAGGAAATGTGACAGATTCTCT
 TAGATTTA  GAGT  TGC ATTTATCTGTCGACAG TTTTTGG  G AAAATCTGT GAATTTT   ATGTTGTA ATGT   TCATT GATGTTGCA      AACATT                                                                               
 ||||||||  ||||  ||| |||||||||||||||| |||||||  | ||||||||| |||||||   |||||||| ||||   ||||| |||||||||      ||||||                                                                                
 ATTTAGAT  CTCA  ACG TAAATAGATAGCTGTC AAAAATC  C TTTTAGATA CTTAAAA   TACAACAT TACA   AGTGA CTACAACGT      TAAGAG                                                                               
A        CC    -C   -                T       CC G         A       TAC        A    ACA     -         CTACAA      GATACAATGTATACTAGCTTTGTACTTCATGCATGTTCTTATTATATAACTTTGTATCATTTATCGTATACATTGTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2720441

TAGATTTAAGAGTTTTGCTATTTATCTGTCGACAGTTTTTTGGCAGAAAATCTGTCGAATTTTTTAATGTTGTAAATGTCATCATTTGATGTTGCAAACATTATTCTTCGATGTTTCAAAATATTTCATGATTTTAGAGGAGGAAATGTGATTTTAGAGGAGGAAATGTGACAGATTCTCTTGATGTTACATATGCTATTTACTATGTTTCAATATATTATTCTTGTACGTACTTCATGTTTCGATCATATGTAACATAGGAGAATAACATCTGCAACATCAGTGAACAACATATACAACATCATAAAATTCAATAGATTTTGCCCCTAAAAATCTGTCGATAGATAAATGCACACTCCCTAGATTTAA

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