Plant MITE

SE2730444

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3777
Setaria italica
SE2730444
hAT
Hat11
scaffold_4:24832516-24832710
GCTGGAGG
CTGGAGGCAGGGGCGGATCCAGGGCCCGGGCTGCCCGGGCTGCAGC

Secondary structure and sequence

TSD TIR

5'

3'

G  GG  G                  CC       -  --      C   --CC     GAGATCATGGAGTCCCTTTAACATATGTGTTGTTTAGCCTAA
 CT  AG CAGGGGCGGATCCAGGGC  GGGCTGC CC  GGGCTG AGC    GGGGC                                          
 ||  || ||||||||||||||||||  ||||||| ||  |||||| |||    |||||                                           
 GA  TC GTCCCCGCCTAGGTCTTG  CCTGACG GG  CCCGAC TCG    TTTAG                                          
G  GG  G                  -C       C  AG      -   ACAA     TGTGGATTTTATCAGATTAGAATAGAAGATTTGGAGTAAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2730444

GCTGGAGGCAGGGGCGGATCCAGGGCCCGGGCTGCCCGGGCTGCAGCCCGGGGCGAGATCATGGAGTCCCTTTAACATATGTGTTGTTTAGCCTAACAAAATGAGGTTTAGAAGATAAGATTAGACTATTTTAGGTGTGATTTAACAGCTCAGCCCGAGGCGCAGTCCCGTTCTGGATCCGCCCCTGGCTGGAGG

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