SE2730449

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3782
  • Setaria italica
  • SE2730449
  • hAT
  • Hat5
  • scaffold_6:29431568-29431747
  • ATGTTAGT
  • GTCAATGTACAAAATAGCGGGTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTA                         -----A    G --  A  GCGGCGTTATAGCGTTTGATGCTAACTGCCGCTACAACAGTGTT
      GTCAATGTACAAAATAGCGGGTTAT      GCGA G  CT TA                                            
      |||||||||||||||||||||||||      |||| |  || ||                                            G
      TAGTTACATGTTTTATCGCCCGATA      ATCG C  CT CG                                            
TGATTG                         CTCTAA    - AT  -  ACACGAGTTGGCGATATCGAGGCGATATCGAGTCGATTAATCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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