SE2730454

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3787
  • Setaria italica
  • SE2730454
  • hAT
  • Hat1
  • scaffold_2:7488981-7489159
  • CAGTCGAT
  • GTCGATCAGGGGCGGAATCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CA      --          A     ATGAACA    GAGGAGGCTAAATAGTAGAGATTAAGGGCTAGAGCTAGAAATTAATGGTGATTTGAA
  GTCGAT  CAGGGGCGGA TCAGG       CCTC                                                         
  ||||||  |||||||||| |||||       ||||                                                          
  TAGCTG  GTCCCCGCCT GGTTC       CCCG                                                         
        AC          A     -----CC    ATCCCCCGACGTCGGGAGGTTCTCGGACTAAAATGGAGATTTTATGACATCTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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