SE2720458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3791
  • Setaria italica
  • SE2720458
  • Mutator
  • M20
  • scaffold_2:47928813-47929243
  • TCAAATTCT
  • GAGAAAATTCCTTATTTGTTATCGGATTTACATCGCTTCCTTATTTGCTTGAAAAAATTTGCCTTCCTTATTTACCA

Secondary structure and sequence

TSD    TIR
5'



3'
TCAAATTCT                      C   -    CA                 TG          C           A   ATAC T       GCC   C C  TCG         ----   -   -  T A        G            A               -----------------  ATATGCATGGCATCAACACATCCTTAAGAAAC
         GAGAAAATTCCTTATTTGTTAT GGA TTTA  TCGCTTCCTTATTTGCT  AAAAAATTTG CTTCCTTATTT CCA    C CAAAATT   TTC C AT   TCATCAACG    TAA TTG AC C AAAAGATG TTTTACCCTTAT ATATAGGGACATATT                 GC                                
         |||||||||||||||||||||| ||| ||||  |||||||||||||||||  |||||||||| ||||||||||| |||    | |||||||   ||| | ||   |||||||||    ||| ||| || | |||||||| |||||||||||| |||||||||||||||                 ||                                 
         CTCTTTTAAGGAATAAACGATA CCT AAAT  AGCGAAGGAATAAACGG  TTTTTTGAAC GAAGGAATAAA GGT    G GTTTTAA   AAG G TA   GGTAGTTGC    ATT AAC TG G TTTTCTAT AAAATGGGAGTA TGTATCCCTGTGTAG                 GG                                
TCTTAAACT                      A   T    AC                 TA          A           C   AGCT C       -AT   T A  TAT         CACA   C   C  T C        A            C               ATAACATTTTAAACATA  TTAACCAAAACGTAGGAGGTATAATCGGGTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End