SE2750463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3796
  • Setaria italica
  • SE2750463
  • PIF/harbinger
  • To1
  • scaffold_2:44490707-44491060
  • TTT
  • GGGGGTGTTTGGATGCG

Secondary structure and sequence

TSD    TIR
5'



3'
TTT                 GGGTAC    C     GAGGG               C                GAC    C   AG            A   C    GAACCTCTATA                                  A     C   -A    -A    TACT
   GGGGGTGTTTGGATGCG      TAAA TTTAG     GTCACATCGGATGTT GGATGCTAATTAGGAG   TAAA ATG  CTAATTATAAAA TAA TGCA           CTAATTCGCGAGACGAATCTATTAAGCCTAATTA TCCAT ATT  GCAA  TGGT    
   |||||||||||||||||      |||| |||||     ||||||||||||||| ||||||||||||||||   |||| |||  |||||||||||| ||| ||||           |||||||||||||||||||||||||||||||||| ||||| |||  ||||  ||||    G
   CCCCCACAAACCTATGT      ATTT AAATC     CAGTGTAGCCTACAA CCTATGATTAATCCTC   ATTT TAT  GATTAATGTTTT ATT ATGT           GATTAAGCGCTCTGCTTAGATAATTCGGATTAAT AGGTA TAA  TGTT  ACCA    
TTT                 GGGGAT    A     ATGGG               A                ATA    A   CA            G   A    -GTCTACCTCA                                  C     C   AC    AC    CGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End