Plant MITE

SE2710465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3798
Setaria italica
SE2710465
Tc1/Mariner
St27
scaffold_2:42230665-42230898
TA
TACTCCCTCCGTCCCTTGAAGAGTGCAATTTTA

Secondary structure and sequence

TSD TIR

5'

3'

               T                 -  TT       ACAAATTAGTGGTGGGGTGAAAAGACTCTAATACCCTTATTTGTTGGTCACATGCAGTAAGTTTTGTCATGCA
TACTCCCTCCGTCCC TGAAGAGTGCAATTTTA GT  TTCTAGG                                                                         
||||||||||||||| ||||||||||||||||| ||  |||||||                                                                         A
ATGAGGGAGGCAGGG ATTTTTCACGTTAGGAT GA  AAACTTT                                                                         
               T                 T  --       TTTTAAGGATATTTTCTCACGTTAGGATCTTGTAACTAGATTGATGGACGGATTAATTCATCAGTCTAGACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710465

TACTCCCTCCGTCCCTTGAAGAGTGCAATTTTAGTTTTTCTAGGACAAATTAGTGGTGGGGTGAAAAGACTCTAATACCCTTATTTGTTGGTCACATGCAGTAAGTTTTGTCATGCAAATCAGATCTGACTACTTAATTAGGCAGGTAGTTAGATCAATGTTCTAGGATTGCACTCTTTTATAGGAATTTTTTTCAAAAGTTAGGATTGCACTTTTTATGGGACGGAGGGAGTA

Copy Cancel