SE2710466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3799
  • Setaria italica
  • SE2710466
  • Tc1/Mariner
  • St3
  • scaffold_8:37089283-37089626
  • TA
  • TACTCCCTCTGTTCCAAATTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       GA  GAGTACCAAATTGTAGGTCGTTTTGGTATTTCTAGAATCATAGTTTGCACTATGTTTTTAGACATAGTGTATATCTAGATAAATACCAAAAGCTATGAACCTACGTATGCTAAAATGACTTATACAATTTGGGATGGAAAGAGTAC
TACTCCCTCTGTTCCAAATTGTA  GG                                                                                                                                                  
|||||||||||||||||||||||  ||                                                                                                                                                   
ATGAGGGAGGCAAGGTTTAATAT  CC                                                                                                                                                  
                       --  AGCAAAACCGAAAATATCTATGTATCTATAATAATACGTAGATCTGTATCCCATATAGATTCACGTATTGTTTCAAATACTTAGATTATTTCAGTTTTGCTGGATATTAAACCCTGCCTCCCTCATGGCTTGTTATATATATGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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