SE2750467

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3800
  • Setaria italica
  • SE2750467
  • PIF/harbinger
  • To27
  • scaffold_2:33519940-33520159
  • TTA
  • AGGCCAGTCTCAGTGGGAGTTTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               G -        - GA   - T     -  CATTAAATTCCATACCACATCAGCAATTTTGCTGACTTGACAAGATCTTTATGAGGAGAGAGAAGGA
  AGGCCAGTCTCAGTG G AGTTTCAT G  GAG T TCATG GG                                                                   
  ||||||||||||||| | |||||||| |  ||| | ||||| ||                                                                   G
  TCCGGTCAGAGTCAC T TCAAAGTA C  GTG C AATGG TC                                                                   
AT               G G        A --   A -     T  TAACCCTTGATCCATTGACACGGACAACTCACAGTACCCCTACTTTGAGGAGAGTGTATGCTACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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