SE2710468

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3801
  • Setaria italica
  • SE2710468
  • Tc1/Mariner
  • St3
  • scaffold_5:38086042-38086192
  • TA
  • TACTCCCTCCATTTCAAAATGTAGGTCGTTTTGGCTTTTCTATATACATAGATTCTGCTATGTATCTAGACATAACCTATATCTAGGTACATAGCAAAAATCATGTATCTAGAAAAGCCAAAACGACCTACAATTTGAAACGGAGGGAGTA

Secondary structure and sequence

TSD    TIR
5'



3'
          A       A                       T      A    -C               C   A
TACTCCCTCC TTTCAAA TGTAGGTCGTTTTGGCTTTTCTA ATACAT GATT  TGCTATGTATCTAGA ATA 
|||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||  ||||||||||||||| ||| C
ATGAGGGAGG AAAGTTT ACATCCAGCAAAACCGAAAAGAT TATGTA CTAA  ACGATACATGGATCT TAT 
          C       A                       C      -    AA               A   C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End