Plant MITE

SE2710477

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3810
Setaria italica
SE2710477
Tc1/Mariner
St34
scaffold_5:12106074-12106311
TA
TACTCCCTCCGTTCTTAAATATATGACGCCGTTGACTTTTTAC

Secondary structure and sequence

TSD TIR

5'

3'

                                 G       A TCTAAC      CAC    ATCTATTGAACGAGTTAGTTAACTAAAGTAAAATGTGTATCATTATGTCTAGTGTCAA
TACTCCCTCCGTTCTTAAATATATGACGCCGTT ACTTTTT C      TTTGAC   CAAT                                                          
||||||||||||||||||||||||||||||||| ||||||| |      ||||||   ||||                                                          A
ATGAGGGAGGCAAGAATTTATATACTGTGGTAA TGAAAAA G      GAACTG   TAAG                                                          
                                 A       A -TAAGC      --A    CAGAAAAGATGTTTCTAAAAACGTTTGTCTATTTGGATGTTCAATTTAGATTTCATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710477

TACTCCCTCCGTTCTTAAATATATGACGCCGTTGACTTTTTACTCTAACTTTGACCACCAATATCTATTGAACGAGTTAGTTAACTAAAGTAAAATGTGTATCATTATGTCTAGTGTCAAATGTACTTTAGATTTAACTTGTAGGTTTATCTGTTTGCAAAAATCTTTGTAGAAAAGACGAATAGTCAAGCGAATGAAAAAAGTAAATGGTGTCATATATTTAAGAACGGAGGGAGTA

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