Plant MITE

SE2750479

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3812
Setaria italica
SE2750479
PIF/harbinger
To1
scaffold_5:6983986-6984346
TTA
TAGGGGGCGTTTTCTTCCCGTGTCTTATTTTTAGCACGTGTCACATCGAATGTTTAGATACTAATTAGGAGTAGTAAACGTAGACTATTTACAAAACCAATTACATAAGTGGAATCTAAACGGCGAGACGAATCTATTAAGCCTAATTAAG

Secondary structure and sequence

TSD TIR

5'

3'

T     -GG           CG  T              G                                   G                        A          TG                                      A CCTAATTAA     C   -A    ATATTTAC   AGC
 TAGGG   CGTTTTCTTCC  TG CTTATTTTTAGCAC TGTCACATCGAATGTTTAGATACTAATTAGGAGTA TAAACGTAGACTATTTACAAAACC ATTACATAAG  GAATCTAAACGGCGAGACGAATCTATTAAGCCTAATTA G         TCCAT ATT  GCAA        TGT   
 |||||   |||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |         ||||| |||  ||||        |||    
 ATTCC   GCAAAAGAAGG  AC GAATAAAAATCGTG GCAGTGTAGCTTACAAATCTATGATTAATCCTCAT ATTTGCATCTGATAAATGTTTTGG TAATGTATTC  CTTAGATTTGCCGCTCTGCTTAGATAATTCGGATTAAT C         AGGTA TAA  TGTT        ACA   
      GGG           TG  T              G                                   A                        G          TG                                      - ---------     C   AC    --------   CAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750479

TTAGGGGGCGTTTTCTTCCCGTGTCTTATTTTTAGCACGTGTCACATCGAATGTTTAGATACTAATTAGGAGTAGTAAACGTAGACTATTTACAAAACCAATTACATAAGTGGAATCTAAACGGCGAGACGAATCTATTAAGCCTAATTAAGCCTAATTAATCCATCATTAGCAAATATTTACTGTAGCAACACATTGTCAAATCATGGACTAATTAGGCTTAATAGATTCGTCTCGCCGTTTAGATTCGTCTTATGTAATGGGTTTTGTAAATAGTCTACGTTTAATACTCCTAATTAGTATCTAAACATTCGATGTGACGGGTGCTAAAAATAAGTCAGTGGAAGAAAACGGGGCCTTA

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