SE2750486

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3819
  • Setaria italica
  • SE2750486
  • PIF/harbinger
  • To26
  • scaffold_2:25090966-25091282
  • TAA
  • AGAGCATCTCCAACGGTCTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            A         -------------      --   -----   AACTACCGTATTGGGAGGGTTGATAAGAAAATAGTGCTCCAACAGTCTCCATTTACCTTTCCCTTTTTCCCAATAATTATTGGGACAACCCAATAATTCATCCCAACTCTCC
  AGAGCATCTCCA CGGTCTCCC             TTTCCC  CAA     TCC                                                                                                                
  |||||||||||| |||||||||             ||||||  |||     |||                                                                                                                C
  TCTCGTAGAGGT GTCAGGGGG             GTTATT  TCA     CCC                                                                                                                
AA            C         TTATTTACAAAGG      GA   ATTAT   TATAGGGTTATAGTGAAAGTGGCAATAATCCTCTCAACGAAAACGTAAGAGGGTTATTAGAGTAGGGTTAGGTTGATGGCATAACCCTCTCAGTGTTGAGGAGGAAATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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