Plant MITE

SE2710491

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3824
Setaria italica
SE2710491
Tc1/Mariner
St28
scaffold_9:8882887-8883127
TA
TACTCCCTCCGTATCAAAATATTTGTCGCTGTTGACTTTTCCTTACAACGTTTGACCATTCGTCTTATTCAAAAATTTGTTGCA

Secondary structure and sequence

TSD TIR

5'

3'

    C                                   CC    A      G                     T    TG  -AATATACGAGAAGA     CATGCTTAAAATACTTT
TACT CCTCCGTATCAAAATATTTGTCGCTGTTGACTTTT  TTAC ACGTTT ACCATTCGTCTTATTCAAAAA TTGT  CA               TAAGT                 
|||| |||||||||||||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||||| ||||  ||               |||||                  
ATGA GGAGGCATAGTTTTATAAACAGCGACAACTGAAAA  AGTG TGTAAA TGGTAAGCAGAATAAGTTTTT AATA  GT               AAACA                 
    T                                   CC    C      G                     T    CA  CATAGTAAACAAAAT     CTGAATGAAACAGTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710491

TACTCCCTCCGTATCAAAATATTTGTCGCTGTTGACTTTTCCTTACAACGTTTGACCATTCGTCTTATTCAAAAATTTGTTGCAAATATACGAGAAGATAAGTCATGCTTAAAATACTTTTGATGACAAAGTAAGTCACAAATAAAACAAATGATACTGACATAATTTTTTGAATAAGACGAATGGTGAAATGTCGTGACCAAAAGTCAACAGCGACAAATATTTTGATACGGAGGTAGTA

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