SE2750493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3826
  • Setaria italica
  • SE2750493
  • PIF/harbinger
  • To39
  • scaffold_5:30469382-30469505
  • CCA
  • GGCCTTGTTTGGATACTAGTGGATTGAAGTGGAATGAGAGGGATTTGAGAGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 CCA   C           CT  T      -   T        A      T   -AG     TAG
    GGC TTGTTTGGATA  AG GGATTG AAG GGAATGAG GGGATT GAG   GAAAT   
    ||| |||||||||||  || |||||| ||| |||||||| |||||| |||   |||||    
    CCG AACAAACCTAT  TC CCTAAC TTC CCTTACTT CCCTAA CTC   TTTTG   
ACCC   -           CT  T      C   -        C      -   AGA     CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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