Plant MITE

SE2740498

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3831
Setaria italica
SE2740498
CACTA
Ca1
scaffold_9:9896149-9896817
TGT
G

Secondary structure and sequence

TSD TIR

5'

3'

  T    CTAGTAGAGAAATGACTTTCCATCCACCTCCTTTTGTCCCGGTTTAAAGTTGGCCCGGGACAAAAGGTTCACCAACCGGGACTAAAACTCGGTCACTGGTGGGGAGCTCACCAACCGGGACCTTTTATCCCGGTTGCAAAGGCTAGTGGGAAAAAAAGACTCTGAGAGGCATTTAATCCCGGTTTGAAACACCAACCGGGATAAAAGGGGGTCTTTTATCCCGGTTGGTGTTTCTAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGTATCCCCTATATAGTCAGATGTGGTGTGTAGGTGGGATGGCAAGGAAGC
   GTCA                                                                                                                                                                                                                                                                                                                                        
   ||||                                                                                                                                                                                                                                                                                                                                        T
   GTGA                                                                                                                                                                                                                                                                                                                                        
TGT    CCACCTCTTGAGTGGATAATAGGGCCAACCATCCCACGTTTCTAGAGCCTTTACGTAGGCCCTGTTTGGTTGGCCCTGTTTTCCCCCCCCAGAAAATAGGGCCCAGTGAGTTGGCCCTGTTTTCTGGGGGAAAATAGGGCCAACCATTATGGTTGGCCCTATTTTCCCAAGTGGGTGCCGGCCGCGACGTTTTTTTTTTTTTTAGGGTTCGAGGGTCCTCCGGGGGGTGTGCGCGTGCAGCGTTCTGTGTTCAGTGCGCTAAAAAGTGCGCTTTATACGCGCACGCGCCAAGCACCCTAAGCTTGGGTGTTGGAGGTCGGAGCGCGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2740498

TGTCACTAGTAGAGAAATGACTTTCCATCCACCTCCTTTTGTCCCGGTTTAAAGTTGGCCCGGGACAAAAGGTTCACCAACCGGGACTAAAACTCGGTCACTGGTGGGGAGCTCACCAACCGGGACCTTTTATCCCGGTTGCAAAGGCTAGTGGGAAAAAAAGACTCTGAGAGGCATTTAATCCCGGTTTGAAACACCAACCGGGATAAAAGGGGGTCTTTTATCCCGGTTGGTGTTTCTAACCGGGATAAAAGGGTCCCCCACGAGTTAATACAAAAGGATAGTATCCCCTATATAGTCAGATGTGGTGTGTAGGTGGGATGGCAAGGAAGCTACGCGCGAGGCTGGAGGTTGTGGGTTCGAATCCCACGAACCGCGCACGCGCATATTTCGCGTGAAAAATCGCGTGACTTGTGTCTTGCGACGTGCGCGTGTGGGGGGCCTCCTGGGAGCTTGGGATTTTTTTTTTTTTTGCAGCGCCGGCCGTGGGTGAACCCTTTTATCCCGGTTGGTATTACCAACCGGGATAAAAGGGGGTCTTTTGTCCCGGTTGAGTGACCCGGGATAAAAGACCCCCCCCTTTTGTCCCGGTTGGTTTGTCCCGGATGCATTTCCGAGATCTTTGCACCCTACCAACCGGGATAATAGGTGAGTTCTCCACCAGTGTGT

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