SE2750501

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3834
  • Setaria italica
  • SE2750501
  • PIF/harbinger
  • To33
  • scaffold_1:9367896-9368349
  • TTA
  • AGGCCATTCTCAGTGGAGAGTTTCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               GA         TACACTATTTCCA  A       ATC    TCAAAGATTTAAGTTGATGAATGAAACAGCCTCACAATGCATAGTTTCATGTCACGATTTCATAGGCTACTCATAGTATTTAATTGTTGTATGGTGTTGAGATCAAATATGCCATATGAATATGTAACCACTTGTAATTGTACCTAAATTAAGTAGTGGCACACTAACCATGGCCAC
  AGGCCATTCTCAGTG  GAGTTTCAT             AG GTGCCAC   ATCT                                                                                                                                                                                 
  |||||||||||||||  |||||||||             || |||||||   ||||                                                                                                                                                                                 A
  TCCGGTAAGAGTTAC  TTCAAAGTA             TC CCAAAGT   TTGA                                                                                                                                                                                 
AT               -G         ------------C  -       ---    GTAATTTACTGTACGGTGTATCCATTTTTACCACTGTACCGTATTTTAAATACTTCTCTCTCTCCTCAACTCAAAGTACCCTACTTTGGGACACATGTGTCAATGGATCTGAAACTTTGATACTACTTTGGGGTAACTCTCGTTAAACAAAATACAGGTATTGAAAACAGCTAGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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