Plant MITE

SE2750507

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3840
Setaria italica
SE2750507
PIF/harbinger
To26
scaffold_2:25090966-25091282
TTA
AGAGCATCTCCAGCAGTCCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TT              A   C   AATAAAT   TCCCAATAACTAGTTAATAGGGATATCCCAATATCACTTTCACCGTTATTAGGAGAGTTGCTTTTGCATTCTCCCAATAATCTCATCCCAATCCAACTACCGTATTGGGAGAGTCACAACTCCTCC
  AGAGCATCTCCAGC GTC CCC       GTT                                                                                                                              
  |||||||||||||| ||| |||       |||                                                                                                                               
  TCTCGTAGAGGTTG CAG GGG       GGG                                                                                                                              
AT              C   A   ---AAAG   TTAGGTTGATGGCATAACCCTCCCAACTATTCTTTTATCACGAGGTTGTCAGAGGTAAATGGAAAGGGAAAAAGGGTTATTAATAACCCTGTTGGGTTATTAAGTAGGGTTGAGAGGGATTTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750507

TTAGAGCATCTCCAGCAGTCCCCCAATAAATGTTTCCCAATAACTAGTTAATAGGGATATCCCAATATCACTTTCACCGTTATTAGGAGAGTTGCTTTTGCATTCTCCCAATAATCTCATCCCAATCCAACTACCGTATTGGGAGAGTCACAACTCCTCCTTTATTTAGGGAGAGTTGGGATGAATTATTGGGTTGTCCCAATAATTATTGGGAAAAAGGGAAAGGTAAATGGAGACTGTTGGAGCACTATTTTCTTATCAACCCTCCCAATACGGTAGTTGGATTGGGGAAAGGGAGACCGTTGGAGATGCTCTTA

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