SE2720509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3842
  • Setaria italica
  • SE2720509
  • Mutator
  • M23
  • scaffold_3:18653617-18653883
  • TTTATATAA
  • TTATATAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -   AAATT   G       GA    A    TAGTCATCCATTTGGTAAAATCGAATGGTGGAAATAAAGGAAGTACCATGAAGTATAAAAAGTACCAATTTGGTGGGACCAAGTACAAAAATAGT
 TTATATAA GAG     TTA AGTGTTT  GAAA ATGA                                                                                               
 |||||||| |||     ||| |||||||  |||| ||||                                                                                                
 AATATATT CTC     AAT TTACGAA  TTTT ATAT                                                                                               
         T   GAAAC   G       AA    -    TCACCATGAACGTCCATGAAAGGAAAGAATGGGAAGAATGTTTTTTCTTAATTTATCTAAATGTGTATTAATTTTCTCGTAGTATCATTAAAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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