SE2740511

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3844
  • Setaria italica
  • SE2740511
  • CACTA
  • Ca5
  • scaffold_9:32212978-32213647
  • TTT
  • CACTACAACATA

Secondary structure and sequence

TSD    TIR
5'



3'
TTT        C   AACC   --A           --        -          --------- CTTGCCCTTATAAATATGTCTTAACGTATTATAAAGACACTTTTTGTGACACTTTAGAAAGTGTCGTATGTGTTGAGACACTACTAGAGGCATTTTCAACCATAGGGACATTTTCTTAAGTCACTTTGTAAAATGCGAATACAGATATTAGGGACATATTTGAGACACTTAAAACTTGACCTTACCCCCATAGAGACATAGTTTAAGACATTCACTGTAATATCTTGAGACACTATTTAGACTATTGAGGCATACTCATGAGAATTATACTAAGT
   CACTACAA ATA    TCA   GTAGAGACACT  TTTTATAG ACATTTTGTG         A                                                                                                                                                                                                                                                                                   
   |||||||| |||    |||   |||||||||||  |||||||| ||||||||||         |                                                                                                                                                                                                                                                                                   A
   GTGATGTT TGT    AGT   CATCTCTGTGA  GAAATAGG TATCTCTGTA         A                                                                                                                                                                                                                                                                                   
TTT        T   -CGA   CTA           TA        A          AAAAACAAC GATATCTCAGTATCTCAGCAAAAGGTTCTACAGTATCTCCACGGTGATGTTTATCACAGAGAAACTTACTTCTCTGTAAAAATATTCACAGGGATATAAAATATTCTGTTGAATATTACCGTGTTATAATACAGAAATAGTAAATTTACTGATCTTTATATAACTTTTTTATAACATAAAAACCTCACTACCCAGAAGCATGAGTTCTGGAGTATAACATAACGTAATATGAGGTGGATGATCGGTCGAGTTGGAGTGTGGTTAAGAATGTATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End