SE2750513

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3846
  • Setaria italica
  • SE2750513
  • PIF/harbinger
  • To61
  • scaffold_7:27162145-27162372
  • TTA
  • TAGGCCCTGTTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
T    -C           GAGATTATAA   A   A           CTA        A   T     C  TA        C   A         G                   A   T
 TAGG  CCTGTTTGTTT          TCC CCT GATTATATAAG   GATTATGG TCA GGGTA TA  GTAAAAGA CAC TTGGGACCA AAATAATCTGAAATAAGCT GTC 
 ||||  |||||||||||          ||| ||| |||||||||||   |||||||| ||| ||||| ||  |||||||| ||| ||||||||| ||||||||||||||||||| ||| T
 ATCC  GGACAAACAAA          GGG GGA CTAATATATTC   CTAATACC GGT CCCAT AT  CATTTTCT GTG AACCCTGGT TTTATTAGACTTTATTCGA CGG 
     CC           ----------   A   A           AAC        A   T     C  CC        A   A         G                   -   G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End