Plant MITE

SE2710514

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3847
Setaria italica
SE2710514
Tc1/Mariner
St9
scaffold_6:33436043-33436385
TA
TACTCCCTCCGTCCCAAAATAAATGTTCATTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                      A    CA     CCTTCAAATTT   -  CACAAAGGATGTTCATTTAGCTTCTAGAGAGACTCATCTAATTAAAGCAACACTCACATCAATAAAAAAAAGTGTATTGAGAAGTGCATAGAGCCAATGAAATGATCAATTGATGATTTTTCT
TACTCCCTCCGTCCCAAAATAA TGTT  TTTAG           TAT CC                                                                                                                           
|||||||||||||||||||||| ||||  |||||           ||| ||                                                                                                                            
ATGAGGGAGGCAGGGTTTTATT ACAA  AAATC           ACC GT                                                                                                                           
                      C    CC     ----TTTTAAA   T  ATAATCATCATCAACACTTTTCACTGGTACGATGGGGATCAATGAGTATAATCAACACCAACTTTCGACGCGCTATACAAACTAAAAGACCTAGGACTTATTTCCGTGCACGTAACCTTGATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2710514

TACTCCCTCCGTCCCAAAATAAATGTTCATTTAGCCTTCAAATTTTATCCCACAAAGGATGTTCATTTAGCTTCTAGAGAGACTCATCTAATTAAAGCAACACTCACATCAATAAAAAAAAGTGTATTGAGAAGTGCATAGAGCCAATGAAATGATCAATTGATGATTTTTCTCTAGTTCCAATGCACGTGCCTTTATTCAGGATCCAGAAAATCAAACATATCGCGCAGCTTTCAACCACAACTAATATGAGTAACTAGGGGTAGCATGGTCACTTTTCACAACTACTACTAATATGTCCAAAATTTTCTAAACCAACACTTATTTTGGGACGGAGGGAGTA

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