Plant MITE

SE2750517

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3850
Setaria italica
SE2750517
PIF/harbinger
To62
scaffold_6:8289154-8289462
TAA
AGGGCCAGTTTGGTAGGGCTCTGGCTCC

Secondary structure and sequence

TSD TIR

5'

3'

TA     CA       A             TCTGAAAAC        C  -     C  -  -AGT    TGGCTTCTCCGGCTTTGGCTCCTCCTTTTAAAAAAATGTTTGGCAAAACGGCTCTTCCTGTGGGCCCTCCCCAAGGAAGAGGAGGAGGAGC
  AGGGC  GTTTGGT GGGCTCTGGCTCC         GGCTCCGG TC TGGCT CT CT    GGAG                                                                                           
  |||||  ||||||| |||||||||||||         |||||||| || ||||| || ||    ||||                                                                                            
  TCCCG  CAAACCA CCCGAGGTCGAGG         CCGAGGTT AG GCCGA GA GA    GGGA                                                                                           
AA     AG       C             ---------        -  C     A  C  CCTC    TGGTTTCCCATCGTAGTGTTTGCCGAGGCGCTCACCTCGTGGGTACCTCGGCCTCGGGAAAAACATGACGGCTCCTCCTCACCGAGGAGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2750517

TAAGGGCCAGTTTGGTAGGGCTCTGGCTCCTCTGAAAACGGCTCCGGCTCTGGCTCCTCTAGTGGAGTGGCTTCTCCGGCTTTGGCTCCTCCTTTTAAAAAAATGTTTGGCAAAACGGCTCTTCCTGTGGGCCCTCCCCAAGGAAGAGGAGGAGGAGCCGGAGGAGCCACTCCTCCTCGGCAGTACAAAAAGGGCTCCGGCTCCATGGGTGCTCCACTCGCGGAGCCGTTTGTGATGCTACCCTTTGGTAGGGCTCCAGCAGAAGCCGCGATTGGAGCCGGAGCTGGAGCCCCACCAAACGAGCCCTAA

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